Skip to content
Applied Genomics
Search
Cancel
GitHub
Select theme
Dark
Light
Auto
Course
Overview
Week 1
Introduction
GitHub Account
Lab
Intro to Unix
Lab
Week 2
Reproducible Research
Documentation
Version Control Systems
Data analysis with Unix
Lab
Week 3
Introduction to Snakemake
Intro to Snakemake
Lab
Week 4
Overview
Transcriptomics
nf-core
The Golden Snidget
Lab
Week 5
Week 6
COSMIC and Galaxy
Lab
Week 7
ChIP-Seq Pre-lab
Downstream ChIP-seq Analysis
Lab
Week 8
ATAC-Seq Data Analysis
Lab
Project Guidelines
Slides
Introduction
An Introduction to Unix
Reproducible Research
Unix Data Analysis
Snakemake
Databases
Epigenomics
ChIP-SEQ
Reference
Conda
misc
VS Code Alternatives
scRNA-Seq
UCSC Genome Browser
UCSC Xena Browser
nf-core chipseq
Readings
Resources
Scripting
Sysbio
AI Bot
GitHub
Select theme
Dark
Light
Auto
Week 4 Overview
Topics
RNA-seq and transcriptomics
nf-core pipelines
Jupyter Notebooks
Snakemake Jupyter Notebook integration